java.lang.Object
- htsjdk.samtools.cram.build.CramContainerIterator

All Implemented Interfaces:

Iterator<Container>

Direct Known Subclasses:

CramContainerHeaderIterator
```
public class CramContainerIterator
extends Object
implements Iterator<Container>
```
An iterator of CRAM containers read from an InputStream.

Constructor Summary

Constructors
Constructor Description

CramContainerIterator(InputStream inputStream)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`close()`
`protected Container`	`containerFromStream(Version cramVersion, CountingInputStream countingStream)`	Consume the entirety of the next container from the stream.
`CramHeader`	`getCramHeader()`
`boolean`	`hasNext()`
`Container`	`next()`
`void`	`remove()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator
forEachRemaining

Constructor Detail

CramContainerIterator

public CramContainerIterator(InputStream inputStream)
                      throws IOException

Throws:: IOException

Method Detail

containerFromStream

protected Container containerFromStream(Version cramVersion,
                                        CountingInputStream countingStream)
                                 throws IOException

Consume the entirety of the next container from the stream.

Parameters:: cramVersion -; countingStream -
Returns:: The next Container from the stream.
Throws:: IOException

hasNext
```
public boolean hasNext()
```
Specified by:

hasNext in interface Iterator<Container>

next
```
public Container next()
```
Specified by:

next in interface Iterator<Container>

remove
```
public void remove()
```
Specified by:

remove in interface Iterator<Container>

getCramHeader
```
public CramHeader getCramHeader()
```

close
```
public void close()
```

Class CramContainerIterator

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Methods inherited from interface java.util.Iterator

Constructor Detail

CramContainerIterator

Method Detail

containerFromStream

hasNext

next

remove

getCramHeader

close