java.lang.Object
- java.io.OutputStream
- - htsjdk.samtools.cram.io.DefaultBitOutputStream

All Implemented Interfaces:: BitOutputStream, Closeable, Flushable, AutoCloseable

public class DefaultBitOutputStream
extends OutputStream
implements BitOutputStream

Constructor Summary

Constructors
Constructor Description

DefaultBitOutputStream(OutputStream delegate)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`close()`
`void`	`flush()`
`String`	`toString()`
`void`	`write(boolean bit)`	Write a single bit specified in the boolean argument.
`void`	`write(boolean bit, long repeat)`	Write a single bit specified in the boolean argument repeatedly.
`void`	`write(byte b)`
`void`	`write(byte[] b)`
`void`	`write(byte[] b, int off, int length)`
`void`	`write(byte bitContainer, int nofBits)`	Write specified number of bits supplied in the byte value.
`void`	`write(int value)`
`void`	`write(int bitContainer, int nofBits)`	Write specified number of bits supplied in the integer value.
`void`	`write(long bitContainer, int nofBits)`	Write specified number of bits supplied in the long value.

Methods inherited from class java.io.OutputStream
nullOutputStream

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - DefaultBitOutputStream
```
public DefaultBitOutputStream(OutputStream delegate)
```
- Method Detail
  - write
```
public void write(byte b)
           throws IOException
```
    Throws:
    
    IOException
  - write
```
public void write(int value)
           throws IOException
```
    Specified by:
    
    write in class OutputStream
    
    Throws:
    
    IOException
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - write
```
public void write(long bitContainer,
                  int nofBits)
           throws IOException
```
    Description copied from interface: BitOutputStream
    
    Write specified number of bits supplied in the long value. The method is naturally limited to 64 bits max.
    
    Specified by:
    
    write in interface BitOutputStream
    
    Parameters:
    
    bitContainer - an integer containing the bits to be written out
    
    nofBits - the number of bits to written out, minimum 0, maximum 64.
    
    Throws:
    
    IOException - as per streaming contract in java.
  - write
```
public void write(int bitContainer,
                  int nofBits)
           throws IOException
```
    Description copied from interface: BitOutputStream
    
    Write specified number of bits supplied in the integer value. The method is naturally limited to 32 bits max.
    
    Specified by:
    
    write in interface BitOutputStream
    
    Parameters:
    
    bitContainer - an integer containing the bits to be written out
    
    nofBits - the number of bits to written out, minimum 0, maximum 32.
    
    Throws:
    
    IOException - as per streaming contract in java.
  - write
```
public void write(byte bitContainer,
                  int nofBits)
           throws IOException
```
    Description copied from interface: BitOutputStream
    
    Write specified number of bits supplied in the byte value. The method is naturally limited to 8 bits max.
    
    Specified by:
    
    write in interface BitOutputStream
    
    Parameters:
    
    bitContainer - an integer containing the bits to be written out
    
    nofBits - the number of bits to written out, minimum 0, maximum 8.
    
    Throws:
    
    IOException - as per streaming contract in java.
  - write
```
public void write(boolean bit)
           throws IOException
```
    Description copied from interface: BitOutputStream
    
    Write a single bit specified in the boolean argument.
    
    Specified by:
    
    write in interface BitOutputStream
    
    Parameters:
    
    bit - emit 1 if true, 0 otherwise.
    
    Throws:
    
    IOException - as per streaming contract in java.
  - write
```
public void write(boolean bit,
                  long repeat)
           throws IOException
```
    Description copied from interface: BitOutputStream
    
    Write a single bit specified in the boolean argument repeatedly.
    
    Specified by:
    
    write in interface BitOutputStream
    
    Parameters:
    
    bit - emit 1 if true, 0 otherwise.
    
    repeat - the number of bits to emit.
    
    Throws:
    
    IOException - as per streaming contract in java.
  - close
```
public void close()
           throws IOException
```
    Specified by:
    
    close in interface AutoCloseable
    
    Specified by:
    
    close in interface Closeable
    
    Overrides:
    
    close in class OutputStream
    
    Throws:
    
    IOException
  - flush
```
public void flush()
           throws IOException
```
    Specified by:
    
    flush in interface Flushable
    
    Overrides:
    
    flush in class OutputStream
    
    Throws:
    
    IOException
  - write
```
public void write(byte[] b)
           throws IOException
```
    Overrides:
    
    write in class OutputStream
    
    Throws:
    
    IOException
  - write
```
public void write(byte[] b,
                  int off,
                  int length)
           throws IOException
```
    Overrides:
    
    write in class OutputStream
    
    Throws:
    
    IOException

Class DefaultBitOutputStream

Constructor Summary

Method Summary

Methods inherited from class java.io.OutputStream

Methods inherited from class java.lang.Object

Constructor Detail

DefaultBitOutputStream

Method Detail

write

write

toString

write

write

write

write

write

close

flush

write

write