Package htsjdk.samtools.cram.lossy
Class BaseCategory
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- htsjdk.samtools.cram.lossy.BaseCategory
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public class BaseCategory extends Object
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Field Summary
Fields Modifier and Type Field Description intparamBaseCategoryTypetype
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description static BaseCategoryflankingDeletion()static BaseCategoryinsertion()static BaseCategorylowerThanCoverage(int coverage)static BaseCategorymatch()static BaseCategorymismatch()static BaseCategorypileup(int threshold)StringtoString()
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Field Detail
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type
public final BaseCategoryType type
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param
public final int param
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Method Detail
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match
public static BaseCategory match()
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mismatch
public static BaseCategory mismatch()
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flankingDeletion
public static BaseCategory flankingDeletion()
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pileup
public static BaseCategory pileup(int threshold)
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lowerThanCoverage
public static BaseCategory lowerThanCoverage(int coverage)
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insertion
public static BaseCategory insertion()
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