public class SubstitutionMatrix
extends Object

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`byte`	`base(byte refBase, byte code)`
`byte`	`code(byte refBase, byte readBase)`
`byte[]`	`getEncodedMatrix()`
`String`	`toString()`

public SubstitutionMatrix(long[][] frequencies)

public SubstitutionMatrix(byte[] matrix)

public byte code(byte refBase,
                 byte readBase)

public byte base(byte refBase,
                 byte code)

Constructor	Description
`SubstitutionMatrix(byte[] matrix)`
`SubstitutionMatrix(long[][] frequencies)`

Class SubstitutionMatrix