Md5CalculatingOutputStream (htsjdk 2.18.2 API)

java.lang.Object
- java.io.OutputStream
- - htsjdk.samtools.util.Md5CalculatingOutputStream

All Implemented Interfaces:

Closeable, Flushable, AutoCloseable
```
public class Md5CalculatingOutputStream
extends OutputStream
```
Class to generate an MD5 string for a file as it is being read

Constructor Summary

Constructors
Constructor	Description
`Md5CalculatingOutputStream(OutputStream os, File digestFile)`
`Md5CalculatingOutputStream(OutputStream os, Path digestFile)`	Constructor that takes in the OutputStream that we are wrapping and creates the MD5 MessageDigest

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`close()`
`void`	`flush()`
`String`	`md5()`
`void`	`write(byte[] b)`
`void`	`write(byte[] b, int off, int len)`
`void`	`write(int b)`

Methods inherited from class java.io.OutputStream
nullOutputStream

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Md5CalculatingOutputStream

public Md5CalculatingOutputStream(OutputStream os,
                                  Path digestFile)

Constructor that takes in the OutputStream that we are wrapping and creates the MD5 MessageDigest

Md5CalculatingOutputStream

public Md5CalculatingOutputStream(OutputStream os,
                                  File digestFile)

Method Detail
- write
```
public void write(int b)
           throws IOException
```
  Specified by:
  
  write in class OutputStream
  
  Throws:
  
  IOException
- write
```
public void write(byte[] b)
           throws IOException
```
  Overrides:
  
  write in class OutputStream
  
  Throws:
  
  IOException
- write
```
public void write(byte[] b,
                  int off,
                  int len)
           throws IOException
```
  Overrides:
  
  write in class OutputStream
  
  Throws:
  
  IOException
- md5
```
public String md5()
```
- close
```
public void close()
           throws IOException
```
  Specified by:
  
  close in interface AutoCloseable
  
  Specified by:
  
  close in interface Closeable
  
  Overrides:
  
  close in class OutputStream
  
  Throws:
  
  IOException
- flush
```
public void flush()
           throws IOException
```
  Specified by:
  
  flush in interface Flushable
  
  Overrides:
  
  flush in class OutputStream
  
  Throws:
  
  IOException