Uses of Class
jebl.evolution.align.Output
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Packages that use Output Package Description jebl.evolution.align Provides classes and interfaces for pairwise alignment of two sequences. -
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Uses of Output in jebl.evolution.align
Subclasses of Output in jebl.evolution.align Modifier and Type Class Description classSystemOutMethods in jebl.evolution.align with parameters of type Output Modifier and Type Method Description voidAlign. doMatch(Output out, java.lang.String msg)Print the score and the alignmentvoidAlign. doMatch(Output out, java.lang.String msg, boolean outputFMatrix)Print the score, the F matrix, and the alignmentabstract voidAlign. printf(Output out)Print the matrix (matrices) used to compute the alignmentvoidNonOverlapMultipleLocalAffine. printf(Output out)Print matrix used to calculate this alignment.
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