Uses of Interface jebl.evolution.align.scores.ScoreMatrix (JEBL2 lib API)

Packages that use ScoreMatrix
Package	Description
jebl.evolution.align.scores

Classes in jebl.evolution.align.scores that implement ScoreMatrix
Modifier and Type	Class	Description
`class`	`AminoAcidScores`
`class`	`Blosum45`
`class`	`Blosum50`
`class`	`Blosum55`
`class`	`Blosum60`
`class`	`Blosum62`
`class`	`Blosum65`
`class`	`Blosum70`
`class`	`Blosum75`
`class`	`Blosum80`
`class`	`Blosum85`
`class`	`Blosum90`
`class`	`Hamming`
`class`	`JukesCantor`	Jukes Cantor assumes equal substitution frequencies and equal nucleotide equilibrium frequencies.
`class`	`NucleotideScores`
`class`	`Pam100`
`class`	`Pam110`
`class`	`Pam120`
`class`	`Pam130`
`class`	`Pam140`
`class`	`Pam150`
`class`	`Pam160`
`class`	`Pam170`
`class`	`Pam180`
`class`	`Pam190`
`class`	`Pam200`
`class`	`Pam210`
`class`	`Pam220`
`class`	`Pam230`
`class`	`Pam240`
`class`	`Pam250`
`class`	`Scores`	Base class for all score matrices in the package.
`class`	`SubstScoreMatrix`

Methods in jebl.evolution.align.scores with parameters of type ScoreMatrix
Modifier and Type	Method	Description
`static Scores`	Scores.`forMatrix(ScoreMatrix scoreMatrix)`

Uses of Interfacejebl.evolution.align.scores.ScoreMatrix