Package jebl.evolution.characters

Class ContinuousCharacter

  • All Implemented Interfaces:
    Character
    public class ContinuousCharacter
extends java.lang.Object
implements Character
    Author:
    Stephen A. Smith

    • Constructor Summary

      Constructors 
      Constructor Description
      ContinuousCharacter​(java.lang.String name, java.lang.String desc)
      Constructs a basic ContinuousCharacter object with no taxa added yet
      ContinuousCharacter​(java.lang.String name, java.lang.String desc, java.util.Set<Taxon> taxa)
      Constructs a basic ContinuousCharacter object with taxa added

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void addTaxa​(java.util.Set<Taxon> taxa)
      set the taxa for this character with a previously constructed Set
      void addTaxon​(Taxon taxon)
      add a taxon with this character
      java.lang.String getDesc()
      return the description of the character
      java.lang.String getName()
      return the name of the character
      double getSE​(Taxon taxon)  
      java.util.Set<Taxon> getTaxa()
      get a Set of all the taxa for this character
      CharacterType getType()
      return the CharacterType of the character
      java.lang.Object getValue​(Taxon taxon)
      get a value for a taxon containing the character
      void setDesc​(java.lang.String desc)
      set the description of the character
      void setName​(java.lang.String name)
      set the name of the character

      • Methods inherited from class java.lang.Object

        equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • ContinuousCharacter

        public ContinuousCharacter​(java.lang.String name,
                           java.lang.String desc)
        Constructs a basic ContinuousCharacter object with no taxa added yet
        Parameters:
        name - the name of the character
        desc - the description of the character

      • ContinuousCharacter

        public ContinuousCharacter​(java.lang.String name,
                           java.lang.String desc,
                           java.util.Set<Taxon> taxa)
        Constructs a basic ContinuousCharacter object with taxa added
        Parameters:
        name - the name of the character
        desc - the description of the character
        taxa - the Set containing the taxa

    • Method Detail

      • setName

        public void setName​(java.lang.String name)
        Description copied from interface: Character
        set the name of the character
        Specified by:
        setName in interface Character
        Parameters:
        name - the name of the character

      • getName

        public java.lang.String getName()
        Description copied from interface: Character
        return the name of the character
        Specified by:
        getName in interface Character
        Returns:
        the name of the character

      • setDesc

        public void setDesc​(java.lang.String desc)
        Description copied from interface: Character
        set the description of the character
        Specified by:
        setDesc in interface Character
        Parameters:
        desc - the description of the character

      • getDesc

        public java.lang.String getDesc()
        Description copied from interface: Character
        return the description of the character
        Specified by:
        getDesc in interface Character
        Returns:
        the description of the character

      • getType

        public CharacterType getType()
        Description copied from interface: Character
        return the CharacterType of the character
        Specified by:
        getType in interface Character
        Returns:
        the CharacterType of the character

      • addTaxa

        public void addTaxa​(java.util.Set<Taxon> taxa)
        set the taxa for this character with a previously constructed Set
        Parameters:
        taxa - a Set of the taxa containing this character

      • addTaxon

        public void addTaxon​(Taxon taxon)
        Description copied from interface: Character
        add a taxon with this character
        Specified by:
        addTaxon in interface Character
        Parameters:
        taxon - the taxon to add containing the character

      • getValue

        public java.lang.Object getValue​(Taxon taxon)
        Description copied from interface: Character
        get a value for a taxon containing the character
        Specified by:
        getValue in interface Character
        Parameters:
        taxon - the taxon to get the value for
        Returns:
        the Object value of the character for the given taxon

      • getSE

        public double getSE​(Taxon taxon)
        Parameters:
        taxon - the taxon for which to get the standard error
        Returns:
        double of the standard error for the taxon

      • getTaxa

        public java.util.Set<Taxon> getTaxa()
        Description copied from interface: Character
        get a Set of all the taxa for this character
        Specified by:
        getTaxa in interface Character
        Returns:
        a Set containing all of the taxa for this character