NucleotideState (JEBL2 lib API)

java.lang.Object
- jebl.evolution.sequences.State
- - jebl.evolution.sequences.NucleotideState

All Implemented Interfaces:

java.lang.Comparable
```
public final class NucleotideState
extends State
```
Version:

$Id: NucleotideState.java 924 2008-06-18 05:58:28Z matt_kearse $

Author:

Andrew Rambaut, Alexei Drummond

Field Summary

Fields
Modifier and Type Field Description

byte bitCode

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`int`	`compareTo(java.lang.Object o)`
`SequenceType`	`getType()`
`boolean`	`isGap()`
`boolean`	`possiblyEqual(State other)`

Methods inherited from class jebl.evolution.sequences.State
fractionEqual, getCanonicalStates, getCode, getFullName, getIndex, getName, isAmbiguous, toString

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - bitCode
```
public final byte bitCode
```
- Method Detail
  - compareTo
```
public int compareTo(java.lang.Object o)
```
    Specified by:
    
    compareTo in interface java.lang.Comparable
    
    Overrides:
    
    compareTo in class State
  - possiblyEqual
```
public boolean possiblyEqual(State other)
```
    Overrides:
    
    possiblyEqual in class State
    
    Parameters:
    
    other - another state to check for the equality with.
    
    Returns:
    
    true if the other state is or possibly is equal to this state, taking ambiguities into account, i.e. if the ambiguity sets of this and the other state intersect.
  - isGap
```
public boolean isGap()
```
    Specified by:
    
    isGap in class State
  - getType
```
public SequenceType getType()
```
    Specified by:
    
    getType in class State