Uses of Interface
jebl.evolution.substmodel.RateMatrix
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Packages that use RateMatrix Package Description jebl.evolution.align.scores jebl.evolution.substmodel -
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Uses of RateMatrix in jebl.evolution.align.scores
Constructors in jebl.evolution.align.scores with parameters of type RateMatrix Constructor Description SubstScoreMatrix(RateMatrix rateMatrix) -
Uses of RateMatrix in jebl.evolution.substmodel
Classes in jebl.evolution.substmodel that implement RateMatrix Modifier and Type Class Description classAbstractRateMatrixabstract base class for all rate matricesclassAminoAcidModelbase class of rate matrices for amino acidsclassWAGWAG model of amino acid evolution (S.Methods in jebl.evolution.substmodel with parameters of type RateMatrix Modifier and Type Method Description voidMatrixExponential. setMatrix(RateMatrix r)update rate matrix used in present moduleConstructors in jebl.evolution.substmodel with parameters of type RateMatrix Constructor Description MatrixExponential(RateMatrix r)create module
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