Uses of Interface jebl.util.Attributable (JEBL2 lib API)

Packages that use Attributable
Package	Description
jebl.evolution.alignments
jebl.evolution.graphs
jebl.evolution.sequences
jebl.evolution.taxa
jebl.evolution.trees
jebl.util

Uses of Attributable in jebl.evolution.alignments

Classes in jebl.evolution.alignments that implement Attributable
Modifier and Type Class Description

class ConsensusSequence

Uses of Attributable in jebl.evolution.graphs

Subinterfaces of Attributable in jebl.evolution.graphs
Modifier and Type	Interface	Description
`interface`	`Edge`	Represents a node in a graph or tree.
`interface`	`Graph`
`interface`	`Node`	Represents a node in a graph or tree.

Uses of Attributable in jebl.evolution.sequences

Subinterfaces of Attributable in jebl.evolution.sequences
Modifier and Type	Interface	Description
`interface`	`Sequence`	A biomolecular sequence.

Classes in jebl.evolution.sequences that implement Attributable
Modifier and Type	Class	Description
`class`	`BasicSequence`	A default implementation of the Sequence interface.
`class`	`CanonicalSequence`	A default implementation of the Sequence interface that converts sequence characters to States such that calling getString() will always return uppercase residues with nucleotide U residues converted to T
`class`	`CodonSequence`	A codon implementation of the Sequence interface.
`class`	`FilteredSequence`
`class`	`GaplessSequence`
`class`	`TranslatedSequence`

Uses of Attributable in jebl.evolution.taxa

Classes in jebl.evolution.taxa that implement Attributable
Modifier and Type Class Description

class Taxon

Uses of Attributable in jebl.evolution.trees

Subinterfaces of Attributable in jebl.evolution.trees
Modifier and Type	Interface	Description
`interface`	`RootedTree`	A tree with a root (node with maximum height).
`interface`	`Tree`	A rooted or unrooted tree.

Classes in jebl.evolution.trees that implement Attributable
Modifier and Type	Class	Description
`class`	`BaseEdge`	Common implementation of Attributable interface used by Nodes.
`class`	`BaseNode`	Common implementation of Attributable interface used by Nodes.
`class`	`CompactRootedTree`	A memory efficient rooted tree.
`class`	`FilteredRootedTree`
`class`	`MutableRootedTree`	A simple rooted tree providing some ability to manipulate the tree.
`class`	`ReRootedTree`
`class`	`RootedFromUnrooted`	Root an unrooted tree.
`class`	`RootedSubtree`	A simple, immutable rooted tree implementation that is a subtree of an existing tree subtending a specified set of taxa..
`class`	`SimpleRootedTree`	A simple, and initially immutable rooted tree implementation.
`class`	`SimpleTree`	A basic implementation on an unrooted tree.
`class`	`SortedRootedTree`
`class`	`TransformedRootedTree`	This RootedTree class wraps another RootedTree and transforms the branch lengths and node heights using various functions.

Uses of Attributable in jebl.util

Classes in jebl.util that implement Attributable
Modifier and Type Class Description

class AttributableHelper