java.lang.Object
- com.pixelmed.apps.ShrinkSegmentationToBoundingBox

```
public class ShrinkSegmentationToBoundingBox
extends java.lang.Object
```
A class of static methods to read DICOM segmentation images, and shrink their extent to the minimum bounding box surrounding the segments.

Constructor Summary

Constructors
Constructor	Description
`ShrinkSegmentationToBoundingBox(java.lang.String inputFileName, java.lang.String outputFileName)`	Read a DICOM segmentation image, and shrink its extent to the minimum bounding box surrounding the segments.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected void`	`addTLHCOfClippedRegionToImagePosition(AttributeList list, int[] box)`
`protected void`	`clipAllFramesToSpecifiedSize(AttributeList list, int[] box)`
`protected int[]`	`compute2DInPlaneBoundingBoxForSegments(AttributeList list)`
`protected static int`	`getBit(byte[] pixelData, int f, int r, int c, int rows, int columns)`
`static void`	`main(java.lang.String[] arg)`	Read a DICOM segmentation image, and shrink its extent to the minimum bounding box surrounding the segments.
`protected static void`	`setBit(byte[] pixelData, int f, int r, int c, int rows, int columns)`

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ShrinkSegmentationToBoundingBox

public ShrinkSegmentationToBoundingBox(java.lang.String inputFileName,
                                       java.lang.String outputFileName)
                                throws DicomException,
                                       java.io.FileNotFoundException,
                                       java.io.IOException

Read a DICOM segmentation image, and shrink its extent to the minimum bounding box surrounding the segments.

Parameters:: inputFileName - the input file name; outputFileName - the output file name
Throws:: DicomException; java.io.FileNotFoundException; java.io.IOException

Method Detail

addTLHCOfClippedRegionToImagePosition

protected void addTLHCOfClippedRegionToImagePosition(AttributeList list,
                                                     int[] box)
                                              throws DicomException

Throws:: DicomException

compute2DInPlaneBoundingBoxForSegments

protected int[] compute2DInPlaneBoundingBoxForSegments(AttributeList list)
                                                throws DicomException

Throws:: DicomException

setBit

protected static void setBit(byte[] pixelData,
                             int f,
                             int r,
                             int c,
                             int rows,
                             int columns)

getBit

protected static int getBit(byte[] pixelData,
                            int f,
                            int r,
                            int c,
                            int rows,
                            int columns)

clipAllFramesToSpecifiedSize

protected void clipAllFramesToSpecifiedSize(AttributeList list,
                                            int[] box)
                                     throws DicomException

Throws:: DicomException

main
```
public static void main(java.lang.String[] arg)
```
Read a DICOM segmentation image, and shrink its extent to the minimum bounding box surrounding the segments.

Parameters:

arg - two parameters, the inputFile, outputFile

Class ShrinkSegmentationToBoundingBox

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

ShrinkSegmentationToBoundingBox

Method Detail

addTLHCOfClippedRegionToImagePosition

compute2DInPlaneBoundingBoxForSegments

setBit

getBit

clipAllFramesToSpecifiedSize

main