Constructor Detail

• NRRDToDicom

  public NRRDToDicom​(java.lang.String inputFileName,
                     java.lang.String outputFileName,
                     java.lang.String patientName,
                     java.lang.String patientID,
                     java.lang.String studyID,
                     java.lang.String seriesNumber,
                     java.lang.String instanceNumber)
              throws java.io.IOException,
                     DicomException,
                     NRRDException

  Read an NRRD image input format files and create an image of a specified or appropriate SOP Class.

  Parameters:

  inputFileName -

  outputFileName -

  patientName -

  patientID -

  studyID -

  seriesNumber -

  instanceNumber -

  Throws:

  java.io.IOException

  DicomException

  NRRDException

• NRRDToDicom

  public NRRDToDicom​(java.lang.String inputFileName,
                     java.lang.String outputFileName,
                     java.lang.String patientName,
                     java.lang.String patientID,
                     java.lang.String studyID,
                     java.lang.String seriesNumber,
                     java.lang.String instanceNumber,
                     java.lang.String modality,
                     java.lang.String sopClass)
              throws java.io.IOException,
                     DicomException,
                     NRRDException,
                     java.lang.NumberFormatException

  Read an NRRD image input format files and create an image of a specified or appropriate SOP Class.

  Parameters:

  inputFileName -

  outputFileName -

  patientName -

  patientID -

  studyID -

  seriesNumber -

  instanceNumber -

  modality - may be null

  sopClass - may be null

  Throws:

  java.io.IOException

  DicomException

  NRRDException

  java.lang.NumberFormatException

Method Detail

• generateGeometryFunctionalGroupsFromNRRDHeader

  public static AttributeList generateGeometryFunctionalGroupsFromNRRDHeader​(NRRDHeader nrrd,
                                                                             AttributeList list)
                                                                      throws DicomException,
                                                                             NRRDException,
                                                                             java.lang.NumberFormatException

  Read a per-frame and shared functional group sequences for the geometry defined in a NRRD file header.

  Parameters:

  nrrd - an NRRD header

  list - an existing (possibly empty) attribute list, if null, a new one will be created; may already shared and per-frame functional group sequences or they will be added return attribute list with per-frame and shared functional group sequences for geometry added

  Throws:

  DicomException

  NRRDException

  java.lang.NumberFormatException

• generateDimensions

  public static AttributeList generateDimensions​(AttributeList list)
                                          throws DicomException

  Create a Dimensions Module.

  Parameters:

  list - return attribute list with Dimensions Module added

  Throws:

  DicomException

• generateDICOMPixelDataModuleAttributesFromNRRDFile

  public static AttributeList generateDICOMPixelDataModuleAttributesFromNRRDFile​(java.io.File inputFile,
                                                                                 NRRDHeader nrrd,
                                                                                 AttributeList list)
                                                                          throws java.io.IOException,
                                                                                 DicomException,
                                                                                 NRRDException,
                                                                                 java.lang.NumberFormatException

  Using an NRRD image input file and header, create DICOM Pixel Data Module attributes.

  Parameters:

  inputFile - an NRRD format image file

  nrrd - an NRRD header already read from the inputFile

  list - an existing (possibly empty) attribute list, if null, a new one will be created; may already include "better" image pixel module attributes to use return attribute list with Image Pixel Module (including Pixel Data) and other attributes added

  Throws:

  java.io.IOException

  DicomException

  NRRDException

  java.lang.NumberFormatException

• main

  public static void main​(java.lang.String[] arg)

  Read an NRRD image input format files and create an image of a specified or appropriate SOP Class.

  Parameters:

  arg - seven, eight or nine parameters, the inputFile, outputFile, patientName, patientID, studyID, seriesNumber, instanceNumber, and optionally the modality, and SOP Class