Constructor Detail

• EncapsulateImageInDicom

  public EncapsulateImageInDicom​(java.lang.String inputFile,
                                 java.lang.String outputFile,
                                 java.lang.String patientName,
                                 java.lang.String patientID,
                                 java.lang.String studyID,
                                 java.lang.String seriesNumber,
                                 java.lang.String instanceNumber,
                                 java.lang.String modality,
                                 java.lang.String sopClass,
                                 AttributeList sourceList)
                          throws java.io.IOException,
                                 DicomException

  Read a consumer image format input file (anything JIIO can recognize), and create a DICOM image of the specified SOP Class, or a single or multi frame DICOM Secondary Capture image.

  Parameters:

  inputFile - consumer image format input file

  outputFile - DICOM output image

  patientName - patient name

  patientID - patient ID

  studyID - study ID

  seriesNumber - series number

  instanceNumber - instance number

  modality - may be null

  sopClass - may be null

  sourceList - list of attributes to use rather than supplied or generated values, may be null or empty

  Throws:

  java.io.IOException - if an I/O error occurs

  DicomException - if error in DICOM encoding

Method Detail

• getCompressionType

  protected static java.lang.String getCompressionType​(org.w3c.dom.Node metadata)

• getBitsPerSample

  protected static short getBitsPerSample​(org.w3c.dom.Node metadata)

• getPhotometricInterpretation

  protected static java.lang.String getPhotometricInterpretation​(org.w3c.dom.Node metadata)

• getElementAttributeFromMetadata

  protected static short getElementAttributeFromMetadata​(org.w3c.dom.Node metadata,
                                                         java.lang.String elementName,
                                                         java.lang.String attributeName)

• getColumns

  public static short getColumns​(org.w3c.dom.Node metadata)

• getRows

  public static short getRows​(org.w3c.dom.Node metadata)

• getSamplesPerPixel

  protected static short getSamplesPerPixel​(org.w3c.dom.Node metadata)

• getSamplePrecision

  protected static short getSamplePrecision​(org.w3c.dom.Node metadata)

• getJPEGProcess

  protected static short getJPEGProcess​(org.w3c.dom.Node metadata)

• getTransferSyntaxUIDFromJPEGProcess

  protected static java.lang.String getTransferSyntaxUIDFromJPEGProcess​(short process)

• generateDICOMPixelModuleFromConsumerImageFile

  public static AttributeList generateDICOMPixelModuleFromConsumerImageFile​(java.lang.String inputFile,
                                                                            AttributeList list)
                                                                     throws java.io.IOException,
                                                                            DicomException

  Read a consumer image format input file (anything JIIO can recognize), and create a single frame DICOM Image Pixel Module.

  Parameters:

  inputFile - a compressed consumer format image file (e.g., 8 or > 8 bit JPEG, JPEG 2000)

  list - an existing (possibly empty) attribute list, if null, a new one will be created; may already include "better" image pixel module attributes to use

  Returns:

  attribute list with Image Pixel Module (including Pixel Data) added

  Throws:

  java.io.IOException - if an I/O error occurs

  DicomException - if error in DICOM encoding

• generateDICOMPixelModuleFromConsumerImageFile

  public static AttributeList generateDICOMPixelModuleFromConsumerImageFile​(java.io.File inputFile,
                                                                            AttributeList list)
                                                                     throws java.io.IOException,
                                                                            DicomException

  Read a consumer image format input file (anything JIIO can recognize), and create a single frame DICOM Image Pixel Module.

  Parameters:

  inputFile - a compressed consumer format image file (e.g., 8 or > 8 bit JPEG, JPEG 2000)

  list - an existing (possibly empty) attribute list, if null, a new one will be created; may already include "better" image pixel module attributes to use

  Returns:

  attribute list with Image Pixel Module (including Pixel Data) added

  Throws:

  java.io.IOException - if an I/O error occurs

  DicomException - if error in DICOM encoding

• generateDICOMPixelModuleFromConsumerImageFile

  public static AttributeList generateDICOMPixelModuleFromConsumerImageFile​(java.lang.String inputFile)
                                                                     throws java.io.IOException,
                                                                            DicomException

  Read a consumer image format input file (anything JIIO can recognize), and create a single frame DICOM Image Pixel Module.

  Parameters:

  inputFile - a consumer format image file (e.g., 8 or > 8 bit JPEG, JPEG 2000, GIF, etc.)

  Returns:

  a new attribute list with Image Pixel Module (including Pixel Data) added

  Throws:

  java.io.IOException - if an I/O error occurs

  DicomException - if error in DICOM encoding

• main

  public static void main​(java.lang.String[] arg)

  Read a compressed grayscale or RGB consumer image format input file (that JIIO can recognize), and encapsulate it in an image of the specified SOP Class, or a single or multi frame DICOM Secondary Capture image.

  Parameters:

  arg - seven, eight or nine parameters, the inputFile, outputFile, patientName, patientID, studyID, seriesNumber, instanceNumber, and optionally the modality, and SOP Class