Package com.pixelmed.dicom

Class JSONRepresentationOfStructuredReportObjectFactory

  • public class JSONRepresentationOfStructuredReportObjectFactory
extends java.lang.Object

    A class to encode a representation of a DICOM Structured Report object in a JSON form, suitable for analysis as human-readable text.

    Note that JSON representations can either contain only the content tree, or also the additional top level DICOM attributes other than those that encode the content tree, as individual DICOM attributes, in the manner of JSONRepresentationOfDicomObjectFactory.

    A typical example of usage to extract just the content tree would be:

    try {
    AttributeList list = new AttributeList();
    list.read("dicomsrfile",null,true,true);
        StructuredReport sr = new StructuredReport(list);
    JsonArray document = new JSONRepresentationOfStructuredReportObjectFactory().getDocument(sr);
    JSONRepresentationOfStructuredReportObjectFactory.write(System.out,document);
} catch (Exception e) {
    slf4jlogger.error("",e);
 }

    or to include the top level attributes as well as the content tree, supply the attribute list as well as the parsed SR content to the write() method:

    try {
    AttributeList list = new AttributeList();
    list.read("dicomsrfile",null,true,true);
        StructuredReport sr = new StructuredReport(list);
    JsonArray document = new JSONRepresentationOfStructuredReportObjectFactory().getDocument(sr,list);
    JSONRepresentationOfStructuredReportObjectFactory.write(System.out,document);
} catch (Exception e) {
    slf4jlogger.error("",e);
 }

    or even simpler, if there is no further use for the JSON document or the SR tree model:

    try {
    AttributeList list = new AttributeList();
    list.read("dicomsrfile",null,true,true);
    JSONRepresentationOfStructuredReportObjectFactory.createDocumentAndWriteIt(list,System.out);
} catch (Exception e) {
    slf4jlogger.error("",e);
 }
    See Also:
    StructuredReport, JSONRepresentationOfDicomObjectFactory, XPathQuery, Document

    • Field Detail

      • elideSeparateContinuityOfContent

        protected static boolean elideSeparateContinuityOfContent

      • collapseAttributeValueArrays

        protected static boolean collapseAttributeValueArrays

      • collapseEmptyToNull

        protected static boolean collapseEmptyToNull

      • collapseContentTreeArrays

        protected static boolean collapseContentTreeArrays

      • substituteUIDKeywords

        protected static boolean substituteUIDKeywords

      • useNumberForNumericContentItemValue

        protected static boolean useNumberForNumericContentItemValue

      • symbolSignifyingReservedKeyword

        protected static java.lang.String symbolSignifyingReservedKeyword

      • businessNameToUseForAnonymousContentItems

        protected static java.lang.String businessNameToUseForAnonymousContentItems

      • reservedKeywordForCodeValueInBusinessNamesFile

        protected static java.lang.String reservedKeywordForCodeValueInBusinessNamesFile

      • reservedKeywordForCodingSchemeDesignatorInBusinessNamesFile

        protected static java.lang.String reservedKeywordForCodingSchemeDesignatorInBusinessNamesFile

      • reservedKeywordForCodeMeaningInBusinessNamesFile

        protected static java.lang.String reservedKeywordForCodeMeaningInBusinessNamesFile

      • reservedKeywordForValueTypeInBusinessNamesFile

        protected static java.lang.String reservedKeywordForValueTypeInBusinessNamesFile

      • reservedKeywordForRelationshipTypeInBusinessNamesFile

        protected static java.lang.String reservedKeywordForRelationshipTypeInBusinessNamesFile

      • reservedKeywordForCodingSchemeVersionInBusinessNamesFile

        protected static java.lang.String reservedKeywordForCodingSchemeVersionInBusinessNamesFile

      • reservedKeywordForLongCodeValueInBusinessNamesFile

        protected static java.lang.String reservedKeywordForLongCodeValueInBusinessNamesFile

      • reservedKeywordForURNCodeValueInBusinessNamesFile

        protected static java.lang.String reservedKeywordForURNCodeValueInBusinessNamesFile

      • reservedKeywordForContextIdentifierInBusinessNamesFile

        protected static java.lang.String reservedKeywordForContextIdentifierInBusinessNamesFile

      • reservedKeywordForContextUIDInBusinessNamesFile

        protected static java.lang.String reservedKeywordForContextUIDInBusinessNamesFile

      • reservedKeywordForMappingResourceInBusinessNamesFile

        protected static java.lang.String reservedKeywordForMappingResourceInBusinessNamesFile

      • reservedKeywordForMappingResourceUIDInBusinessNamesFile

        protected static java.lang.String reservedKeywordForMappingResourceUIDInBusinessNamesFile

      • reservedKeywordForMappingResourceNameInBusinessNamesFile

        protected static java.lang.String reservedKeywordForMappingResourceNameInBusinessNamesFile

      • reservedKeywordForContextGroupVersionInBusinessNamesFile

        protected static java.lang.String reservedKeywordForContextGroupVersionInBusinessNamesFile

      • reservedKeywordForContextGroupExtensionFlagInBusinessNamesFile

        protected static java.lang.String reservedKeywordForContextGroupExtensionFlagInBusinessNamesFile

      • reservedKeywordForContextGroupLocalVersionInBusinessNamesFile

        protected static java.lang.String reservedKeywordForContextGroupLocalVersionInBusinessNamesFile

      • reservedKeywordForContextGroupExtensionCreatorUIDInBusinessNamesFile

        protected static java.lang.String reservedKeywordForContextGroupExtensionCreatorUIDInBusinessNamesFile

      • reservedKeywordForObservationDateTimeAttributeInSRFile

        protected static java.lang.String reservedKeywordForObservationDateTimeAttributeInSRFile

      • reservedKeywordForObservationUIDAttributeInSRFile

        protected static java.lang.String reservedKeywordForObservationUIDAttributeInSRFile

      • reservedKeywordForContinuityOfContentAttributeInSRFile

        protected static java.lang.String reservedKeywordForContinuityOfContentAttributeInSRFile

      • reservedKeywordForTemplateMappingResourceAttributeInSRFile

        protected static java.lang.String reservedKeywordForTemplateMappingResourceAttributeInSRFile

      • reservedKeywordForTemplateIdentifierAttributeInSRFile

        protected static java.lang.String reservedKeywordForTemplateIdentifierAttributeInSRFile

      • reservedKeywordForSimplifiedLabelAttributeInSRFile

        protected static java.lang.String reservedKeywordForSimplifiedLabelAttributeInSRFile

      • reservedKeywordForSimplifiedReferenceToLabelAttributeInSRFile

        protected static java.lang.String reservedKeywordForSimplifiedReferenceToLabelAttributeInSRFile

      • reservedKeywordForReferencedSOPClassUIDAttributeInCompositeContentItem

        protected static java.lang.String reservedKeywordForReferencedSOPClassUIDAttributeInCompositeContentItem

      • reservedKeywordForReferencedSOPInstanceUIDAttributeInCompositeContentItem

        protected static java.lang.String reservedKeywordForReferencedSOPInstanceUIDAttributeInCompositeContentItem

      • reservedKeywordForReferencedFrameNumberAttributeInCompositeContentItem

        protected static java.lang.String reservedKeywordForReferencedFrameNumberAttributeInCompositeContentItem

      • reservedKeywordForReferencedSegmentNumberAttributeInCompositeContentItem

        protected static java.lang.String reservedKeywordForReferencedSegmentNumberAttributeInCompositeContentItem

      • reservedKeywordForPresentationStateSOPClassUIDAttributeInCompositeContentItem

        protected static java.lang.String reservedKeywordForPresentationStateSOPClassUIDAttributeInCompositeContentItem

      • reservedKeywordForPresentationStateSOPInstanceUIDAttributeInCompositeContentItem

        protected static java.lang.String reservedKeywordForPresentationStateSOPInstanceUIDAttributeInCompositeContentItem

      • reservedKeywordForRealWorldValueMappingSOPClassUIDAttributeInCompositeContentItem

        protected static java.lang.String reservedKeywordForRealWorldValueMappingSOPClassUIDAttributeInCompositeContentItem

      • reservedKeywordForRealWorldValueMappingSOPInstanceUIDAttributeInCompositeContentItem

        protected static java.lang.String reservedKeywordForRealWorldValueMappingSOPInstanceUIDAttributeInCompositeContentItem

      • reservedKeywordForGraphicTypeAttributeInCoordinatesContentItem

        protected static java.lang.String reservedKeywordForGraphicTypeAttributeInCoordinatesContentItem

      • reservedKeywordFor2DCoordinatesAttributeInCoordinatesContentItem

        protected static java.lang.String reservedKeywordFor2DCoordinatesAttributeInCoordinatesContentItem

      • reservedKeywordFor3DCoordinatesAttributeInCoordinatesContentItem

        protected static java.lang.String reservedKeywordFor3DCoordinatesAttributeInCoordinatesContentItem

      • reservedKeywordForPixelOriginInterpretationAttributeInCoordinatesContentItem

        protected static java.lang.String reservedKeywordForPixelOriginInterpretationAttributeInCoordinatesContentItem

      • reservedKeywordForFiducialUIDAttributeInCoordinatesContentItem

        protected static java.lang.String reservedKeywordForFiducialUIDAttributeInCoordinatesContentItem

      • reservedKeywordForReferencedFrameOfReferenceUIDAttributeInCoordinatesContentItem

        protected static java.lang.String reservedKeywordForReferencedFrameOfReferenceUIDAttributeInCoordinatesContentItem

      • reservedKeywordForMeasurementUnitsAttributeInNumericContentItem

        protected static java.lang.String reservedKeywordForMeasurementUnitsAttributeInNumericContentItem

      • reservedKeywordForFloatingPointValueAttributeInNumericContentItem

        protected static java.lang.String reservedKeywordForFloatingPointValueAttributeInNumericContentItem

      • reservedKeywordForRationalNumeratorAttributeInNumericContentItem

        protected static java.lang.String reservedKeywordForRationalNumeratorAttributeInNumericContentItem

      • reservedKeywordForRationalDenominatorAttributeInNumericContentItem

        protected static java.lang.String reservedKeywordForRationalDenominatorAttributeInNumericContentItem

      • reservedKeywordForNumericValueQualifierAttributeInNumericContentItem

        protected static java.lang.String reservedKeywordForNumericValueQualifierAttributeInNumericContentItem

      • reservedKeywordForAlphabeticPropertyInPersonNameContentItem

        protected static java.lang.String reservedKeywordForAlphabeticPropertyInPersonNameContentItem

      • reservedKeywordForIdeographicPropertyInPersonNameContentItem

        protected static java.lang.String reservedKeywordForIdeographicPropertyInPersonNameContentItem

      • reservedKeywordForPhoneticPropertyInPersonNameContentItem

        protected static java.lang.String reservedKeywordForPhoneticPropertyInPersonNameContentItem

      • simplifiedLabelPrefix

        protected static java.lang.String simplifiedLabelPrefix

      • businessNames

        protected java.util.Map<java.lang.String,​CodedSequenceItem> businessNames

      • valueTypesByBusinessName

        protected java.util.Map<java.lang.String,​java.util.SortedSet<java.lang.String>> valueTypesByBusinessName

      • relationshipTypesByBusinessName

        protected java.util.Map<java.lang.String,​java.util.SortedSet<java.lang.String>> relationshipTypesByBusinessName

      • contentItemIdentifiersByContentItem

        protected java.util.Map<ContentItem,​java.lang.String> contentItemIdentifiersByContentItem

      • simplifiedLabelByReferencedContentItemIdentifiers

        protected java.util.Map<java.lang.String,​java.lang.String> simplifiedLabelByReferencedContentItemIdentifiers

      • simplifiedLabelCounter

        protected int simplifiedLabelCounter

      • referencedContentItemIdentifiersBySimplifiedLabel

        protected java.util.Map<java.lang.String,​java.lang.String> referencedContentItemIdentifiersBySimplifiedLabel

    • Constructor Detail

      • JSONRepresentationOfStructuredReportObjectFactory

        public JSONRepresentationOfStructuredReportObjectFactory()

        Construct a factory object, which can be used to get JSON documents from DICOM objects.

    • Method Detail

      • isCommonAnnotationAttribute

        protected boolean isCommonAnnotationAttribute​(java.lang.String attributeName)

      • makeBusinessNameFromCodeMeaning

        public static java.lang.String makeBusinessNameFromCodeMeaning​(java.lang.String codeMeaning,
                                                               boolean upperCamelCase)

      • makeBusinessNameFromCodeMeaning

        public static java.lang.String makeBusinessNameFromCodeMeaning​(CodedSequenceItem conceptName)

      • getCodedSequenceItemForBusinessName

        public CodedSequenceItem getCodedSequenceItemForBusinessName​(java.lang.String businessName,
                                                             java.lang.String location,
                                                             boolean roleIsAsConceptName)

      • getCodedSequenceItemForBusinessNameUsedAsConceptName

        public CodedSequenceItem getCodedSequenceItemForBusinessNameUsedAsConceptName​(java.lang.String businessName,
                                                                              java.lang.String location)

      • getCodedSequenceItemForBusinessNameUsedAsValue

        public CodedSequenceItem getCodedSequenceItemForBusinessNameUsedAsValue​(java.lang.String businessName,
                                                                        java.lang.String location)

      • getCodedSequenceItemForBusinessNameUsedAsUnits

        public CodedSequenceItem getCodedSequenceItemForBusinessNameUsedAsUnits​(java.lang.String businessName,
                                                                        java.lang.String location)

      • getBusinessNamesDocument

        public javax.json.JsonArray getBusinessNamesDocument()

      • addCodedSequenceItemPropertyFromBusinessName

        protected void addCodedSequenceItemPropertyFromBusinessName​(javax.json.JsonObject businessNamePayload,
                                                            AttributeList csilist,
                                                            AttributeTag tag,
                                                            java.lang.String reservedKeywordInBusinessNamesFile)

      • loadBusinessNamesDocument

        public void loadBusinessNamesDocument​(javax.json.JsonArray document)
                               throws DicomException

        Load the business names encoded in a JSON document.

        Parameters:
        document - the JSON document
        Throws:
        DicomException

      • loadBusinessNamesDocument

        public void loadBusinessNamesDocument​(java.io.InputStream stream)
                               throws java.io.IOException,
                                      DicomException

        Load the business names encoded in a JSON document.

        Parameters:
        stream - the input stream containing the JSON document
        Throws:
        java.io.IOException
        DicomException

      • loadBusinessNamesDocument

        public void loadBusinessNamesDocument​(java.io.File file)
                               throws java.io.IOException,
                                      DicomException

        Load the business names encoded in a JSON document.

        Parameters:
        file - the input file containing the JSON document
        Throws:
        java.io.IOException
        DicomException

      • loadBusinessNamesDocument

        public void loadBusinessNamesDocument​(java.lang.String name)
                               throws java.io.IOException,
                                      DicomException

        Load the business names encoded in a JSON document.

        Parameters:
        name - the input file containing the JSON document
        Throws:
        java.io.IOException
        DicomException

      • walkTreeBuildingSimplifiedLabelsForReferencedContentItemIdentifiers

        protected void walkTreeBuildingSimplifiedLabelsForReferencedContentItemIdentifiers​(ContentItem node,
                                                                                   java.lang.String location)

        Walk the tree starting at the specified node.

        Parameters:
        node -
        location - the dotted numeric string describing the location of the starting node

      • getDocument

        public javax.json.JsonArray getDocument​(AttributeList list)
                                 throws DicomException

        Given a DICOM attribute list encoding a Structured Report, get a JSON document.

        Parameters:
        list - the attribute list
        Returns:
        the JSON encoded DICOM SR document
        Throws:
        DicomException

      • getDocument

        public javax.json.JsonArray getDocument​(StructuredReport sr)
                                 throws DicomException

        Given a DICOM Structured Report, get a JSON document of the content tree only.

        Parameters:
        sr - the Structured Report
        Returns:
        the JSON encoded DICOM SR document
        Throws:
        DicomException

      • getDocument

        public javax.json.JsonArray getDocument​(StructuredReport sr,
                                        AttributeList list)
                                 throws DicomException

        Given a DICOM Structured Report, get a JSON document of the content tree and the top level DICOM elements.

        Parameters:
        sr - the Structured Report may be null if list is not - will build an sr tree model
        list - the attribute list may be null if only the sr content tree is to be added
        Returns:
        the JSON encoded DICOM SR document
        Throws:
        DicomException

      • getDocument

        public javax.json.JsonArray getDocument​(java.io.File file)
                                 throws java.io.IOException,
                                        DicomException

        Given a DICOM object encoded as a list of attributes, get a JSON document.

        Parameters:
        file - the DICOM file
        Returns:
        the JSON document
        Throws:
        java.io.IOException
        DicomException

      • getDocument

        public javax.json.JsonArray getDocument​(java.lang.String filename)
                                 throws java.io.IOException,
                                        DicomException

        Given a DICOM object encoded as a list of attributes, get a JSON document.

        Parameters:
        filename - the DICOM file name
        Returns:
        the JSON document
        Throws:
        java.io.IOException
        DicomException

      • getStringFromSelectedContentItemValue

        protected java.lang.String getStringFromSelectedContentItemValue​(javax.json.JsonArray contentItemValues,
                                                                 int which,
                                                                 java.lang.String what,
                                                                 java.lang.String valueType,
                                                                 CodedSequenceItem concept)

      • getSingleStringValueOrNullFromJsonStringOrNumberContentItemValue

        protected java.lang.String getSingleStringValueOrNullFromJsonStringOrNumberContentItemValue​(javax.json.JsonValue entry,
                                                                                            java.lang.String valueType,
                                                                                            CodedSequenceItem concept)

      • getSingleStringValueOrNullFromJsonContentItemValue

        protected java.lang.String getSingleStringValueOrNullFromJsonContentItemValue​(javax.json.JsonValue entry,
                                                                              java.lang.String valueType,
                                                                              CodedSequenceItem concept)

      • haveChildrenForSingleStringOrCodeJsonContentItemValue

        protected boolean haveChildrenForSingleStringOrCodeJsonContentItemValue​(javax.json.JsonValue contentItemValue,
                                                                        javax.json.JsonObject contentItemAttributesObject)

      • determineUnknownValueType

        protected java.lang.String determineUnknownValueType​(java.lang.String parentValueType,
                                                     javax.json.JsonValue childObjectValue)

      • selectTheOtherOfTwoStringsInSet

        protected static java.lang.String selectTheOtherOfTwoStringsInSet​(java.lang.String method,
                                                                  java.lang.String location,
                                                                  java.util.Set<java.lang.String> theSet,
                                                                  java.lang.String doNotWant)

      • selectFromAlternativeValueTypesForBusinessName

        protected java.lang.String selectFromAlternativeValueTypesForBusinessName​(java.lang.String childLocation,
                                                                          java.lang.String childBusinessName,
                                                                          java.lang.String parentValueType,
                                                                          java.util.Set<java.lang.String> childValueTypes,
                                                                          javax.json.JsonValue childObjectValue)

      • selectFromAlternativeRelationshipTypesForBusinessName

        protected java.lang.String selectFromAlternativeRelationshipTypesForBusinessName​(java.lang.String childLocation,
                                                                                 java.lang.String childBusinessName,
                                                                                 java.lang.String parentValueType,
                                                                                 java.lang.String childValueType,
                                                                                 java.util.Set<java.lang.String> childRelationshipTypes)

      • determineUnknownRelationshipType

        protected java.lang.String determineUnknownRelationshipType​(java.lang.String parentValueType,
                                                            java.lang.String childValueType,
                                                            javax.json.JsonValue childObjectValue)

      • getContentItemAttributesObject

        protected javax.json.JsonObject getContentItemAttributesObject​(javax.json.JsonArray contentItemAttributesAndChildrenArray)

      • getContentItemAndChildrenFromJSONObjectValue

        protected ContentItem getContentItemAndChildrenFromJSONObjectValue​(java.lang.String businessName,
                                                                   CodedSequenceItem concept,
                                                                   java.lang.String valueType,
                                                                   java.lang.String relationshipType,
                                                                   javax.json.JsonValue contentItemValue,
                                                                   java.lang.String location)
                                                            throws DicomException
        Throws:
        DicomException

      • getStructuredReport

        public StructuredReport getStructuredReport​(javax.json.JsonObject topLevelObject)
                                     throws DicomException

        Given a DICOM SR object encoded in a JSON document convert it to a StructuredReport using the content tree and ignoring any header attributes.

        Parameters:
        topLevelObject - the first object of the array that is the JSON document
        Returns:
        the StructuredReport
        Throws:
        DicomException

      • getStructuredReport

        public StructuredReport getStructuredReport​(javax.json.JsonArray document)
                                     throws DicomException

        Given a DICOM SR object encoded as a JSON document convert it to a StructuredReport using the content tree and ignoring any header attributes.

        Parameters:
        document - the JSON document
        Returns:
        the StructuredReport
        Throws:
        DicomException

      • getAttributeList

        public AttributeList getAttributeList​(javax.json.JsonObject topLevelObject)
                               throws DicomException

        Given a DICOM SR object encoded in a JSON document convert it to a list of attributes.

        Parameters:
        topLevelObject - the first object of the array that is the JSON document
        Returns:
        the list of DICOM attributes
        Throws:
        DicomException

      • getAttributeList

        public AttributeList getAttributeList​(javax.json.JsonArray document)
                               throws DicomException

        Given a DICOM SR object encoded as a JSON document convert it to a list of attributes.

        Parameters:
        document - the JSON document
        Returns:
        the list of DICOM attributes
        Throws:
        DicomException

      • getAttributeList

        public AttributeList getAttributeList​(java.io.InputStream stream)
                               throws java.io.IOException,
                                      DicomException

        Given a DICOM SR object encoded as a JSON document in a stream convert it to a list of attributes.

        Parameters:
        stream - the input stream containing the JSON document
        Returns:
        the list of DICOM attributes
        Throws:
        java.io.IOException
        DicomException

      • getAttributeList

        public AttributeList getAttributeList​(java.io.File file)
                               throws java.io.IOException,
                                      DicomException

        Given a DICOM SR object encoded as a JSON document in a file convert it to a list of attributes.

        Parameters:
        file - the input file containing the JSON document
        Returns:
        the list of DICOM attributes
        Throws:
        java.io.IOException
        DicomException

      • getAttributeList

        public AttributeList getAttributeList​(java.lang.String name)
                               throws java.io.IOException,
                                      DicomException

        Given a DICOM SR object encoded as a JSON document in a named file convert it to a list of attributes.

        Parameters:
        name - the input file containing the JSON document
        Returns:
        the list of DICOM attributes
        Throws:
        java.io.IOException
        DicomException

      • write

        public static void write​(java.io.OutputStream out,
                         javax.json.JsonArray document)
                  throws java.io.IOException

        Serialize a JSON document.

        Parameters:
        out - the output stream to write to
        document - the JSON document
        Throws:
        java.io.IOException

      • write

        public static void write​(java.io.File outputFile,
                         javax.json.JsonArray document)
                  throws java.io.IOException

        Serialize a JSON document.

        Parameters:
        outputFile - the output file to write to
        document - the JSON document
        Throws:
        java.io.IOException

      • write

        public static void write​(java.lang.String outputPath,
                         javax.json.JsonArray document)
                  throws java.io.IOException

        Serialize a JSON document.

        Parameters:
        outputPath - the output path to write to
        document - the JSON document
        Throws:
        java.io.IOException

      • createDocumentAndWriteIt

        public static void createDocumentAndWriteIt​(AttributeList list,
                                            java.io.OutputStream out)
                                     throws java.io.IOException,
                                            DicomException

        Serialize a JSON document created from a DICOM Structured Report.

        Parameters:
        list - the attribute list
        out - the output stream to write to
        Throws:
        java.io.IOException
        DicomException

      • createDocumentAndWriteIt

        public static void createDocumentAndWriteIt​(StructuredReport sr,
                                            java.io.OutputStream out)
                                     throws java.io.IOException,
                                            DicomException

        Serialize a JSON document created from a DICOM Structured Report.

        Parameters:
        sr - the Structured Report
        out - the output stream to write to
        Throws:
        java.io.IOException
        DicomException

      • createDocumentAndWriteIt

        public static void createDocumentAndWriteIt​(StructuredReport sr,
                                            AttributeList list,
                                            java.io.OutputStream out)
                                     throws DicomException

        Serialize a JSON document created from a DICOM attribute list.

        Parameters:
        sr - the Structured Report - may be null if list is not - will build an sr tree model
        list - the list of DICOM attributes
        out - the output stream to write to
        Throws:
        DicomException

      • createDocumentAndWriteIt

        public static void createDocumentAndWriteIt​(StructuredReport sr,
                                            AttributeList list,
                                            java.io.File outputFile)
                                     throws java.io.IOException,
                                            DicomException

        Serialize a JSON document created from a DICOM attribute list.

        Parameters:
        sr - the Structured Report - may be null if list is not - will build an sr tree model
        list - the list of DICOM attributes
        outputFile - the output file to write to
        Throws:
        java.io.IOException
        DicomException

      • createDocumentAndWriteIt

        public static void createDocumentAndWriteIt​(StructuredReport sr,
                                            AttributeList list,
                                            java.lang.String outputPath)
                                     throws java.io.IOException,
                                            DicomException

        Serialize a JSON document created from a DICOM attribute list.

        Parameters:
        sr - the Structured Report - may be null if list is not - will build an sr tree model
        list - the list of DICOM attributes
        outputPath - the output path to write to
        Throws:
        java.io.IOException
        DicomException

      • main

        public static void main​(java.lang.String[] arg)

        Read a DICOM dataset (that contains a structured report) and write a JSON representation of it to the standard output or specified path, or vice versa.

        Parameters:
        arg - either one input path of the file containing the DICOM/JSON dataset and a business name file path to read or write, or a direction argument (toDICOM or toJSON, case insensitive) and an input path and an input or output business name path, and optionally an output path