PairwiseAligner (JEBL2 lib API)

All Known Implementing Classes:

NeedlemanWunschLinearSpaceAffine
```
public interface PairwiseAligner
```
Version:

$Id: PairwiseAligner.java 315 2006-05-03 02:13:54Z alexeidrummond $

Author:

Joseph Heled

Nested Class Summary

Nested Classes
Modifier and Type Interface Description

static class PairwiseAligner.Result

Nested Classes
Modifier and Type	Interface	Description
`static class`	`PairwiseAligner.Result`

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`PairwiseAligner.Result`	`doAlignment(Sequence seq1, Sequence seq2, ProgressListener progress)`
`double`	`getScore(Sequence seq1, Sequence seq2)`

Method Detail

doAlignment

PairwiseAligner.Result doAlignment(Sequence seq1,
                                   Sequence seq2,
                                   ProgressListener progress)

getScore

double getScore(Sequence seq1,
                Sequence seq2)

Interface PairwiseAligner

Nested Class Summary

Method Summary

Method Detail

doAlignment

getScore