| Package | Description |
|---|---|
| jebl.evolution.align.scores |
| Modifier and Type | Class | Description |
|---|---|---|
class |
Hamming |
|
class |
JukesCantor |
Jukes Cantor assumes equal substitution frequencies and equal nucleotide
equilibrium frequencies.
|
| Modifier and Type | Field | Description |
|---|---|---|
static NucleotideScores |
NucleotideScores.CLUSTALW |
|
static NucleotideScores |
NucleotideScores.IUB |
|
static NucleotideScores |
ScoresFactory.NUCLEOTIDE_51_PERCENT_SIMILARITY |
|
static NucleotideScores |
ScoresFactory.NUCLEOTIDE_65_PERCENT_SIMILARITY |
|
static NucleotideScores |
ScoresFactory.NUCLEOTIDE_70_PERCENT_SIMILARITY |
|
static NucleotideScores |
ScoresFactory.NUCLEOTIDE_93_PERCENT_SIMILARITY |
| Modifier and Type | Method | Description |
|---|---|---|
static NucleotideScores[] |
ScoresFactory.getAvailableNucleotideScores() |
| Constructor | Description |
|---|---|
NucleotideScores(NucleotideScores scores) |
http://code.google.com/p/jebl2/