PHYLIPExporter (JEBL2 lib API)

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java.lang.Object
- jebl.evolution.io.PHYLIPExporter

All Implemented Interfaces:

AlignmentExporter, TreeExporter
```
public class PHYLIPExporter
extends java.lang.Object
implements AlignmentExporter, TreeExporter
```
Export alignment to Phylip format. Must be one of the most braindead format around. Try to output something that hopefuly any "Phylip supported" variant can read - up to 9 name chars, followed by a blank, followed by sequence on one line.

Version:

$Id: PHYLIPExporter.java 841 2007-11-11 21:36:42Z twobeers $

Author:

Joseph Heled

Constructor Summary

Constructors
Constructor Description

PHYLIPExporter(java.io.Writer writer)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`exportAlignment(Alignment alignment)`	export one alignment.
`void`	`exportTree(Tree tree)`	Export a single tree
`void`	`exportTrees(java.util.Collection<? extends Tree> trees)`	Export a collection of trees

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - PHYLIPExporter
```
public PHYLIPExporter(java.io.Writer writer)
```
    Parameters:
    
    writer - where export text goes
- Method Detail
  - exportAlignment
```
public void exportAlignment(Alignment alignment)
                     throws java.io.IOException
```
    Description copied from interface: AlignmentExporter
    
    export one alignment.
    
    Specified by:
    
    exportAlignment in interface AlignmentExporter
    
    Parameters:
    
    alignment - to export
    
    Throws:
    
    java.io.IOException
  - exportTree
```
public void exportTree(Tree tree)
                throws java.io.IOException
```
    Description copied from interface: TreeExporter
    
    Export a single tree
    
    Specified by:
    
    exportTree in interface TreeExporter
    
    Throws:
    
    java.io.IOException
  - exportTrees
```
public void exportTrees(java.util.Collection<? extends Tree> trees)
                 throws java.io.IOException
```
    Description copied from interface: TreeExporter
    
    Export a collection of trees
    
    Specified by:
    
    exportTrees in interface TreeExporter
    
    Throws:
    
    java.io.IOException

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http://code.google.com/p/jebl2/