| Package | Description |
|---|---|
| jebl.evolution.align |
Provides classes and interfaces for pairwise alignment of two sequences.
|
| jebl.evolution.io | |
| jebl.evolution.trees |
| Class | Description |
|---|---|
| ImportException |
| Class | Description |
|---|---|
| AlignmentExporter | |
| AlignmentImporter | |
| ByteBuilder |
Similar to a StringBuilder, but its internal buffer is a byte[] with
one entry for each character, so it can only correctly append single-byte
characters.
|
| DistanceMatrixImporter | |
| DistanceMatrixImporter.Triangle | |
| IllegalCharacterPolicy |
What to do when an imported document contains illegal characters
|
| ImmediateSequenceImporter |
A sequence importer sending the sequences back one by one, which makes it
possible to import larger documents if handled wisely on the other side.
|
| ImmediateSequenceImporter.Callback | |
| ImportException | |
| NexusImporter.NexusBlock |
Represents the block types used in the nexus format
|
| SequenceExporter | |
| SequenceImporter |
Interface for importers that do sequences
|
| TreeExporter | |
| TreeImporter |
Interface for importers that do trees
|
| Class | Description |
|---|---|
| ImportException | |
| NexusImporter |
Class for importing NEXUS file format.
|
http://code.google.com/p/jebl2/