TranslatedSequence (JEBL2 lib API)

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Summary:
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Detail:
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java.lang.Object
- jebl.evolution.sequences.FilteredSequence
- - jebl.evolution.sequences.TranslatedSequence

All Implemented Interfaces:

java.lang.Comparable, Sequence, Attributable
```
public class TranslatedSequence
extends FilteredSequence
```
Author:

Andrew Rambaut

Nested Class Summary
- Nested classes/interfaces inherited from interface jebl.util.Attributable
  Attributable.Utils

Constructor Summary

Constructors
Constructor	Description
`TranslatedSequence(Sequence source, GeneticCode geneticCode)`	Create a TranslatedSequence from a source codon or nucleotide sequence
`TranslatedSequence(Sequence source, GeneticCode geneticCode, int frame)`	Create a TranslatedSequence from a source codon or nucleotide sequence

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method Description

SequenceType getSequenceType()
- Methods inherited from class jebl.evolution.sequences.FilteredSequence
  compareTo, getAttribute, getAttributeMap, getAttributeNames, getLength, getState, getStateIndices, getStates, getString, getTaxon, removeAttribute, setAttribute, toString
- Methods inherited from class java.lang.Object
  equals, getClass, hashCode, notify, notifyAll, wait, wait, wait
- Methods inherited from interface jebl.evolution.sequences.Sequence

- Constructor Detail
  - TranslatedSequence
```
public TranslatedSequence(Sequence source,
                          GeneticCode geneticCode)
```
    Create a TranslatedSequence from a source codon or nucleotide sequence
    
    Parameters:
    
    source -
    
    geneticCode -
  - TranslatedSequence
```
public TranslatedSequence(Sequence source,
                          GeneticCode geneticCode,
                          int frame)
```
    Create a TranslatedSequence from a source codon or nucleotide sequence
    
    Parameters:
    
    source -
    
    geneticCode -
    
    frame - indexed from 1
- Method Detail
  - getSequenceType
```
public SequenceType getSequenceType()
```
    Specified by:
    
    getSequenceType in interface Sequence
    
    Overrides:
    
    getSequenceType in class FilteredSequence
    
    Returns:
    
    the type of symbols that this sequence is made up of.

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http://code.google.com/p/jebl2/