NeighborJoiningTreeBuilder (JEBL2 lib API)

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java.lang.Object
- jebl.evolution.trees.ClusteringTreeBuilder<Tree>
- - jebl.evolution.trees.NeighborJoiningTreeBuilder

All Implemented Interfaces:

TreeBuilder<Tree>
```
public class NeighborJoiningTreeBuilder
extends ClusteringTreeBuilder<Tree>
```
Constructs an unrooted tree by neighbor-joining using pairwise distances. Adapted from BEAST code.

Version:

$Id: NeighborJoiningTreeBuilder.java 855 2007-12-11 04:04:18Z twobeers $

Author:

Andrew Rambaut, Alexei Drummond, Joseph Heled

- Constructor Summary
  
  Constructors
  Constructor Description
  
  NeighborJoiningTreeBuilder(DistanceMatrix distanceMatrix)
  construct NJ tree
- Method Summary
  - Methods inherited from class jebl.evolution.trees.ClusteringTreeBuilder
    addProgressListener, build, fireSetProgress, getBuilder, removeProgressListener
  - Methods inherited from class java.lang.Object
    equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - NeighborJoiningTreeBuilder
```
public NeighborJoiningTreeBuilder(DistanceMatrix distanceMatrix)
```
    construct NJ tree
    
    Parameters:
    
    distanceMatrix - distance matrix

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http://code.google.com/p/jebl2/